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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
BLCA rs11949767 chr5:176740244 A/G LOC388955 chr2:63849182-63850159:- 0.43 8.72 8.4E-17 Box Plot
BLCA rs11951059 chr5:176563698 A/G LOC388955 chr2:63849182-63850159:- -0.62 -12.69 4.65E-31 Box Plot
BLCA rs11952102 chr5:176740704 G/A LOC388955 chr2:63849182-63850159:- 0.4 7.96 1.98E-14 Box Plot
BLCA rs11952997 chr5:148788201 A/G GIN1 chr5:102421704-102455855:- 0.75 6.21 1.36E-9 Box Plot
BLCA rs11952997 chr5:148788201 A/G PWWP2A chr5:159488808-159546430:- 0.67 6.01 4.22E-9 Box Plot
BLCA rs11952997 chr5:148788201 A/G TTC1 chr5:159436120-159492550:+ 0.75 6.4 4.48E-10 Box Plot
BLCA rs11953493 chr5:154810757 A/T TMEM176A chr7:150497491-150502208:+ 0.44 5.99 4.92E-9 Box Plot
BLCA rs11956434 chr5:99616931 C/T CT47A9 chrX:120077415-120080737:- 0.23 7.03 9.63E-12 Box Plot
BLCA rs11957176 chr5:115107500 A/G RIOK2 chr5:96496571-96518964:- 0.7 6.02 4.01E-9 Box Plot
BLCA rs11957608 chr5:176655345 T/C LOC388955 chr2:63849182-63850159:- -0.6 -12.38 7.72E-30 Box Plot
BLCA rs11959799 chr5:99616950 A/G CT47A9 chrX:120077415-120080737:- 0.23 7.03 9.63E-12 Box Plot
BLCA rs11959991 chr5:154810755 C/T TMEM176A chr7:150497491-150502208:+ 0.44 5.99 4.92E-9 Box Plot
BLCA rs11962305 chr6:28199937 G/C BTN3A2 chr6:26365387-26378548:+ -0.38 -6.63 1.18E-10 Box Plot
BLCA rs11965538 chr6:28239915 G/A BTN3A2 chr6:26365387-26378548:+ -0.38 -6.06 3.17E-9 Box Plot
BLCA rs11967137 chr6:28199764 A/G BTN3A2 chr6:26365387-26378548:+ -0.36 -6.32 7.44E-10 Box Plot